windowmasker

Name windowmasker
Description

windowmasker is part of the new blast+ package from the NCBI.

windowmasker identifies and masks highly repetitive DNA sequences in a genome, using only the sequence of the genome itself.

Help on the options available can be found by typing windowmasker -help


Homepage http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=helpblast&part=CmdLineAppsManual  
Remote Documentation http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=helpblast&part=CmdLineAppsManual

http://www.ncbi.nlm.nih.gov/bookshelf/br.fc
 

User manual for blast+ (windowmasker) programs