MImapqtl is part of the QTL Cartographer suite of programs.

MImapqtl uses multiple interval mapping to map quantitative trait loci to a map of molecular markers. It requires a molecular map that could be a random one produced by Rmap, or a real one in the same format as the output of Rmap.

In addition, the program can use an initial genetic model. This model will most likely be produced by running Eqtl on the results of a Zmapqtl run, but could be the results of a prior run of MImapqtl.